Pembrolizumab for advanced basal cell carcinoma: an investigator-initiated, proof-of-concept study
Chang ALS, Tran DC, Cannon JGD, Li S, Jeng M, Patel R, Van der Bokke L, Pague A, Brotherton R, Rieger KE, Satpathy AT, Yost KE, Reddy S, Sarin K, Colevas AD.
Journal of the American Academy of Dermatology, 1 February 2019
Coupled single-cell CRISPR screening and epigenomic profiling reveals causal gene regulatory networks
Rubin AJ*, Parker KR*, Satpathy AT*, Qi Y, Wu B, Ong AJ, Mumbach MR, Ji AL, Kim DS, Cho SW, Zarnegar BJ, Greenleaf WJ, Chang HY*, Khavari PA*.
Cell, 10 January 2019
The chromatin accessibility landscape of primary human cancers
Corces MR*, Granja JM*, Shams S, Louie BH, Seoane JA, Zhou W, Silva TC, Greoneveld C, Wong CK, Cho SW, Satpathy AT, Mumbach MR, Hoadley KA, Robertson AG, Sheffield NC, Felau I, Castro MAA, Berman BP, Staudt LM, Zenklusen JC, Laird PW, Curtis C, TCGA, Greenleaf WJ*, Chang HY*.
Science, 26 October 2018
Notch2-dependent DC2s mediate splenic germinal center responses
Briseno CG, Satpathy AT, Davidson JT, Ferris ST, Dura V, Bagadia P, O’Connor KW, Theisen DJ, Murphy TL, Murphy KM.
PNAS, 16 October 2018
Enhancer connectome nominates target genes of inherited risk variants from inflammatory skin disorders
Jeng MY, Mumbach MR, Granja JM, Satpathy AT, Chang HY, Chang ALS.
Journal of Investigative Dermatology, 10 October 2018
Expression of the transcription factor ZBTB46 distinguishes human histiocytic disorders of classical dendritic cell origin
Satpathy AT*#, Brown RA*, Gomulia E, Briseno CG, Mumbach MR, Pan Z, Murphy KM, Natkunam Y, Chang HY, Kim J. *contributed equally, #corresponding author
Modern Pathology, 1 September 2018
Integrative analysis of single-cell genomics data by coupled nonnegative matrix factorizations
Duren Z*, Chen X*, Zamanighomi M*, Zeng W, Satpathy AT, Chang HY, Wang Y, Wong W.
PNAS, 24 July 2018
Transcript-indexed ATAC-seq for precision immune profiling
Satpathy AT*, Saligrama N*, Buenrostro JD*, Wei Y, Wu B, Rubin AJ, Granja JM, Li R, Mumbach MR, Lareau CA, Serratelli WS, Gennert DG, Schep AN, Corces MR, Kim YH, Khavari PA, Greenleaf WJ, Davis MM*, Chang HY*. *contributed equally
Nature Medicine, 1 May 2018
Enhancer connectome in primary human cells reveals target genes of disease-associated DNA elements
Mumbach MR*, Satpathy AT*, Boyle EA*, Dai C*, Gowen BG, Cho SW, Nguyen ML, Rubin AJ, Granja JM, Kazane KR, Wei Y, Nguyen T, Greenside PG, Corces MR, Tycko J, Simeonov DR, Suliman N, Li R, Xu J, Flynn RA, Kundaje A, Khavari PA, Marson A, Corn JE, Quertermous T, Greenleaf WJ*, Chang HY*.
Nature Genetics, 1 November 2017
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
Corces MR, Trevino AE, Hamilton EG, Greenside PG, Sinnott-Armstrong NA, Vesuna S, Satpathy AT, Rubin AJ, Montine KS, Wu B, Kathiria A, Cho SW, Mumbach MR, Carter AC, Kasowski M, Orloff LA, Risca VI, Kundaje A, Khavari PA, Montine TJ, Greenleaf WJ*, Chang HY*.
Nature Methods, 1 October 2017